ACL_RS04380

Uniprot: A9NGL9
Description: ribonuclease Y
EC number: 3.1.-.-
Annotation score: 2 out of 5
Miscellaneous [CC]:
Protein existence: Inferred from homology
Catalytic activity:
Cofactor:
Enzyme regulation:
Function [CC]: FUNCTION: Endoribonuclease that initiates mRNA decay. {ECO:0000255|HAMAP-Rule:MF_00335}.
Pathway:
Active site:
Binding site:
Calcium binding:
DNA binding:
Metal binding:
Nucleotide binding:
Site:
Gene names (primary): rny
Gene names (synonym):
Mass: 59,045
Subunit structure [CC]:
Gene ontology (GO): integral component of membrane [GO:0016021]; plasma membrane [GO:0005886]; endoribonuclease activity [GO:0004521]; RNA binding [GO:0003723]; mRNA catabolic process [GO:0006402]
Gene ontology IDs: GO:0003723; GO:0004521; GO:0005886; GO:0006402; GO:0016021
Chain: CHAIN 1 526 Ribonuclease Y. /FTId=PRO_0000344806.
Signal peptide:
Domain [CC]:
Sequence similarities: SIMILARITY: Belongs to the RNase Y family. {ECO:0000255|HAMAP-Rule:MF_00335}.; SIMILARITY: Contains 1 HD domain. {ECO:0000255|HAMAP-Rule:MF_00335}.; SIMILARITY: Contains 1 KH domain. {ECO:0000255|HAMAP-Rule:MF_00335}.
Protein families: RNase Y family
Coiled coil:
Domain [FT]: DOMAIN 216 279 KH. {ECO:0000255|HAMAP-Rule:MF_00335}.; DOMAIN 343 434 HD. {ECO:0000255|HAMAP-Rule:MF_00335}.
Motif:
Region:
EMBL: CP000896
ProteinModelPortal: A9NGL9
MEROPS:
EnsemblBacteria KO: ABX81499
UniPathway: K18682
CDD:
Gene3D:
HAMAP: 1.10.3210.10;3.30.1370.10
InterPro: MF_00335
PANTHER: IPR003607;IPR006674;IPR006675;IPR004087;IPR004088;IPR017705;IPR022711
PIRSF:
PRINTS:
PROSITE:
Pfam: PS50084
ProDom: PF12072;PF01966;PF00013
SMART:
SUPFAM: SM00471;SM00322
TIGRFAMs: SSF54791

917511-919092(-)

>nucleotide sequence
TTATTTAGCTACATCCGTTGCTCGTTTTTCACGAATAACTGTAACTTTGATGGTTCCAGG
ATATGTCATTTGTGCTTCAATCTTTTCTTTGATTGTGCGCGCAATATTAATTAATCCTAA
ATCATCTACTTTATCAGGTAATACCATAACACGTACTTCACGACCAGCTTGAATAGCATA
TGCTTTATCAACACCAGTTACATCATTAGAAATTTCTTCTAATTGTGTTAGACGTTTCAT
GTAGGAGTCCATAGATTCAGATCTTGCACCTGGACGCGCTGCAGATAATGCATCTGCTGC
TGCAACTAAAACTGCAATAATTGATTCTGGCTCGCTATCACCATGGTGAGATGCGATTGC
ATCAATAACTTCTTTAGGTTCTTTATATCTTGACATAAGTTCCACACCAATCGATACGTG
TGAACCTTCTACTTCATGATCAATTGCTTTACCAATGTCATGGAATAAACCAGCACGACG
TGCAAGCATTTCATTTTCACCAATTTCAGCAGCTAATTTCCCTGCTAGGAAGGCTACTTC
AATTGAGTGTTTCAATACGTTTTGACCATAGGATGTTCTAAATGTCATACGCCCTAATAG
TTTAATAATATCTGGATGTACTTTACCCACACCAGTTTTAAATACTGCTTCTTCACCAGC
TTCGCGGATGAACATGTCAATTTCTGTTCTTGCACGTTCAACAACTTCTTCAATACGTCC
TGGATGAATTCTACCATCTTGAACTAATATTGTTAAAGCACGTTTTGCAACTTCACGTCT
TACAGGGTCAAAACCTGATAAAACTACTGCTTCTGGTGTATCGTCAATAATTAGATCCAC
TCCAGTGAGAGCCTCAAGTGATCTAATGTTTCTTCCTTCTTTACCAATGATACGACCTTT
CATGTCTTCATTTGGTATTTCAACAACTGTAACTGTACGTTCAGATGTTGTTTCAGCTGC
ATATTTTTGCATAGCAAGTGATAATATCTCTTTACTCTTATTTTGAGCAATAGACTTCGC
ATTATCCTCTTCATCTCTAATATAAGCCGCAATTTCATTTGAGATAGAATCCCTTACTTG
AGCCATTATCAATTCACGAGCTTGCTCTCTTGACAACGCTGAAATAGAACTGAGTTTCTC
CTCTTGTTCCTTTATTAATTCTTCCACTTTGCTATATTGGATATCAAGTTGTTCTTTACG
TTCGTTATGTCTTTCTTCTTTAGCGTCCAGACCGATTTCACGTTTATCTAAATATTGTGA
TCTTTGGTTTAAAGCATTCTCACGTTGAGTTGCTTTTTCTTCAAGATTCATGACGATTTG
ACGGCGATCTTTAATATCTTCATCAAATTCTTTACGTAACGTTAAAATTTCTTGTTTAGC
TTCAAAAACCATCTCTCTTTTAGTTCTATCAGCTTCTTTTTTTCCGTCTTCAATAATACG
TTCAGCTTCTTCTCTAGCCAAACGTAAACTTTTTTCATGTTGAGCTACACGAATAAAATA
ACCCACCAAAGCACCACCAAGGGCACCTACGACGATTAGCAAAATGAAGGTAATTAATGC
AGGAGTGTCAACATTAAACAT

>protein sequence
MFNVDTPALITFILLIVVGALGGALVGYFIRVAQHEKSLRLAREEAERIIEDGKKEADRT
KREMVFEAKQEILTLRKEFDEDIKDRRQIVMNLEEKATQRENALNQRSQYLDKREIGLDA
KEERHNERKEQLDIQYSKVEELIKEQEEKLSSISALSREQARELIMAQVRDSISNEIAAY
IRDEEDNAKSIAQNKSKEILSLAMQKYAAETTSERTVTVVEIPNEDMKGRIIGKEGRNIR
SLEALTGVDLIIDDTPEAVVLSGFDPVRREVAKRALTILVQDGRIHPGRIEEVVERARTE
IDMFIREAGEEAVFKTGVGKVHPDIIKLLGRMTFRTSYGQNVLKHSIEVAFLAGKLAAEI
GENEMLARRAGLFHDIGKAIDHEVEGSHVSIGVELMSRYKEPKEVIDAIASHHGDSEPES
IIAVLVAAADALSAARPGARSESMDSYMKRLTQLEEISNDVTGVDKAYAIQAGREVRVMV
LPDKVDDLGLINIARTIKEKIEAQMTYPGTIKVTVIREKRATDVAK