GCW_00285

Uniprot: A0A0F6CJV5
Description: 50S ribosomal protein L4
EC number:
Annotation score: 2 out of 5
Miscellaneous [CC]:
Protein existence: Inferred from homology
Catalytic activity:
Cofactor:
Enzyme regulation:
Function [CC]: FUNCTION: Forms part of the polypeptide exit tunnel. {ECO:0000256|HAMAP-Rule:MF_01328}.; FUNCTION: One of the primary rRNA binding proteins, this protein initially binds near the 5'-end of the 23S rRNA. It is important during the early stages of 50S assembly. It makes multiple contacts with different domains of the 23S rRNA in the assembled 50S subunit and ribosome. {ECO:0000256|HAMAP-Rule:MF_01328}.
Pathway:
Active site:
Binding site:
Calcium binding:
DNA binding:
Metal binding:
Nucleotide binding:
Site:
Gene names (primary): rplD
Gene names (synonym):
Mass: 23,219
Subunit structure [CC]: SUBUNIT: Part of the 50S ribosomal subunit. {ECO:0000256|HAMAP-Rule:MF_01328}.
Gene ontology (GO): ribosome [GO:0005840]; rRNA binding [GO:0019843]; structural constituent of ribosome [GO:0003735]; translation [GO:0006412]
Gene ontology IDs: GO:0003735; GO:0005840; GO:0006412; GO:0019843
Chain:
Signal peptide:
Domain [CC]:
Sequence similarities: SIMILARITY: Belongs to the ribosomal protein L4P family. {ECO:0000256|HAMAP-Rule:MF_01328}.
Protein families: Ribosomal protein L4P family
Coiled coil:
Domain [FT]:
Motif:
Region:
EMBL: CP006916
ProteinModelPortal:
MEROPS:
EnsemblBacteria KO: AHB99377
UniPathway: K02926
CDD:
Gene3D:
HAMAP: 3.40.1370.10
InterPro: MF_01328_B
PANTHER: IPR002136;IPR023574;IPR013005
PIRSF: PTHR10746
PRINTS:
PROSITE:
Pfam:
ProDom: PF00573
SMART:
SUPFAM:
TIGRFAMs: SSF52166
68792-69422(+)

>nucleotide sequence
ATGTCTAAAATAAAATTATTCGATTTATCTGGAAAAGTTCAAGAAGAAATCGAACTAAAT
CAAAAACTGCTTGTTAGTGAAGTACATAAACAAGCAATCTTCGATGCAATTCTTGCTGAA
AACCTATCACAAATTCAAGGGACTCACTCAACTCTTAAAAAAGGTGAAGTGAGCGGTGGT
GGTAAGAAACCTTACCAACAAAAACACACCGGTCGTGCAAGACAAGGTTCGATTCGTAAC
CCTCATTACGTAGGTGGTGGTATCGCTTTTGGTCCTAAACCAAATCGTAATTACAAAATT
AAGGTAAATAAAAAAGTAAGTTCATTAGCTTTCAAATCAGCAATTACTTCTAAAGTTAAT
AACAACGAATTCTTAGGATTAGTTGATTCGATTAAACAAGATAAACCAAGTACAAAAGCA
ATTGCTAAATTACTAAAAGAACTTAAGGTTAATAAAAAAGTATTAATCGTAGCTTTTGAA
AAAAACGAAAACCTAGAAAAATCTAGTGCTAACTTACCTAACGTTTCATACAGACTATGA
AACCAAGTATCAGTAAAAGACTTAATTGATGCTAACTGTGTCTTAGCGCAAAAAAGTGCA
ATTAATAACTGAGTTGAAAGGCTGAACTAA

>protein sequence
MSKIKLFDLSGKVQEEIELNQKLLVSEVHKQAIFDAILAENLSQIQGTHSTLKKGEVSGG
GKKPYQQKHTGRARQGSIRNPHYVGGGIAFGPKPNRNYKIKVNKKVSSLAFKSAITSKVN
NNEFLGLVDSIKQDKPSTKAIAKLLKELKVNKKVLIVAFEKNENLEKSSANLPNVSYRLW
NQVSVKDLIDANCVLAQKSAINNWVERLN