GCW_00355

Uniprot: A0A0F6CJW9
Description: 50S ribosomal protein L6
EC number:
Annotation score: 2 out of 5
Miscellaneous [CC]:
Protein existence: Inferred from homology
Catalytic activity:
Cofactor:
Enzyme regulation:
Function [CC]: FUNCTION: This protein binds to the 23S rRNA, and is important in its secondary structure. It is located near the subunit interface in the base of the L7/L12 stalk, and near the tRNA binding site of the peptidyltransferase center. {ECO:0000256|HAMAP-Rule:MF_01365, ECO:0000256|RuleBase:RU003870}.
Pathway:
Active site:
Binding site:
Calcium binding:
DNA binding:
Metal binding:
Nucleotide binding:
Site:
Gene names (primary): rplF
Gene names (synonym):
Mass: 20,389
Subunit structure [CC]: SUBUNIT: Part of the 50S ribosomal subunit. {ECO:0000256|HAMAP-Rule:MF_01365}.
Gene ontology (GO): ribosome [GO:0005840]; rRNA binding [GO:0019843]; structural constituent of ribosome [GO:0003735]; translation [GO:0006412]
Gene ontology IDs: GO:0003735; GO:0005840; GO:0006412; GO:0019843
Chain:
Signal peptide:
Domain [CC]:
Sequence similarities: SIMILARITY: Belongs to the ribosomal protein L6P family. {ECO:0000256|HAMAP-Rule:MF_01365, ECO:0000256|RuleBase:RU003869}.
Protein families: Ribosomal protein L6P family
Coiled coil:
Domain [FT]: DOMAIN 11 84 Ribosomal_L6. {ECO:0000259|Pfam:PF00347}.; DOMAIN 92 166 Ribosomal_L6. {ECO:0000259|Pfam:PF00347}.
Motif:
Region:
EMBL: CP006916
ProteinModelPortal:
MEROPS:
EnsemblBacteria KO: AHB99391
UniPathway: K02933
CDD:
Gene3D:
HAMAP: 3.90.930.12
InterPro: MF_01365_B
PANTHER: IPR000702;IPR020040;IPR019906;IPR002358
PIRSF: PTHR11655
PRINTS: PIRSF002162
PROSITE: PR00059
Pfam: PS00525
ProDom: PF00347
SMART:
SUPFAM:
TIGRFAMs: SSF56053
75238-75790(+)

>nucleotide sequence
ATGTCAAGAATTGGTAATAGAGTTATCACAGTTCCTAGCAATGTTAGTGTTAACCAAACT
AAAGAACTATTAACAGTTAAAGGCCCGTTAGGTCAATTAGATCTTAAGTTAAAAGAAGGC
AGCAAAATTAAGGTCAACGTTGAAAACAACGAAATCAGACTAACCCGAGGTGATGAATTA
AAGCAAACGAAGATGTTACATGGTACTTACAATGCGTTAATTAAAAACGCATTAGAAGGA
GTAACTATTGGTTTTAAAAAAGAATTACGCTTAGTAGGTGTGGGTTATCGTGCTAGCTTA
AAGGGTAATGTTTTAAATTTACAATTAGGTTACTCACACCCAATTAATTTAGATATTCCA
AAAGATCTAAAAGTAACTGTTGATAAGAACACTGAGATCACTGTCAGTGGAATTGATAAG
CAAAAAGTTGGTGAGTTTGCTATCCAGATCCGTAAGTGAAGAATGCCAGAACCATATAAA
GGTAAAGGTGTGTTATACCTTAACGAACAAATTATTCGTAAAGCTGGTAAGACCGCAGAA
GGGAAAAAATAA

>protein sequence
MSRIGNRVITVPSNVSVNQTKELLTVKGPLGQLDLKLKEGSKIKVNVENNEIRLTRGDEL
KQTKMLHGTYNALIKNALEGVTIGFKKELRLVGVGYRASLKGNVLNLQLGYSHPINLDIP
KDLKVTVDKNTEITVSGIDKQKVGEFAIQIRKWRMPEPYKGKGVLYLNEQIIRKAGKTAE
GKK