GCW_01005

Uniprot: A0A0F6CK61
Description: Sigma-factor r4 (-35 recognition) protein, part of sigma-70, provisional transcription regulator
EC number:
Annotation score: 2 out of 5
Miscellaneous [CC]:
Protein existence: Inferred from homology
Catalytic activity:
Cofactor:
Enzyme regulation:
Function [CC]: FUNCTION: Might take part in the signal recognition particle (SRP) pathway. This is inferred from the conservation of its genetic proximity to ftsY/ffh. May be a regulatory protein. {ECO:0000256|HAMAP-Rule:MF_00245, ECO:0000256|SAAS:SAAS00367545}.
Pathway:
Active site:
Binding site:
Calcium binding:
DNA binding:
Metal binding:
Nucleotide binding:
Site:
Gene names (primary): ylxM
Gene names (synonym):
Mass: 13,064
Subunit structure [CC]:
Gene ontology (GO): DNA binding [GO:0003677]; sigma factor activity [GO:0016987]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; DNA-templated transcription, initiation [GO:0006352]
Gene ontology IDs: GO:0003677; GO:0003700; GO:0006352; GO:0016987
Chain:
Signal peptide:
Domain [CC]:
Sequence similarities: SIMILARITY: Belongs to the UPF0122 family. {ECO:0000256|HAMAP-Rule:MF_00245, ECO:0000256|SAAS:SAAS00557716}.
Protein families: UPF0122 family
Coiled coil:
Domain [FT]:
Motif:
Region:
EMBL: CP006916
ProteinModelPortal:
MEROPS:
EnsemblBacteria KO: AHB99483
UniPathway: K09787
CDD:
Gene3D:
HAMAP: 1.10.10.10
InterPro: MF_00245
PANTHER: IPR013324;IPR007394;IPR011991
PIRSF:
PRINTS:
PROSITE:
Pfam:
ProDom: PF04297
SMART:
SUPFAM:
TIGRFAMs: SSF88659
217454-217781(+)

>nucleotide sequence
TTGATTATGAAAAAACAAGTAATTAGTTTTGAACAGTGAAATCTGTTAAATGAACTGTTC
TCTTATTATCACAAGTTGTTGTCAGATAAGATTAAACTTTATTTGGAAGAGTTTTTAATT
AACAACTTGTCATATAACGAGATTGCTACTAACTACCAGATCTCCAAATATGCTGTTTAT
GATCAGATCCAAAAAGGGATCGAACAATTAAAAAACTATGAACAGTTATTATTGTTAAAC
CAACTATCAAAACAAAGACTTAAACTGTACGAACAAATTAGCGATCCTAACTTAAAACAA
GCATTACTAATTATTGAACAAAAATAA

>protein sequence
LIMKKQVISFEQWNLLNELFSYYHKLLSDKIKLYLEEFLINNLSYNEIATNYQISKYAVY
DQIQKGIEQLKNYEQLLLLNQLSKQRLKLYEQISDPNLKQALLIIEQK