SPM_004930

Uniprot: A0A037UN69
Description: 50S ribosomal protein L4
EC number:
Annotation score: 2 out of 5
Miscellaneous [CC]:
Protein existence: Inferred from homology
Catalytic activity:
Cofactor:
Enzyme regulation:
Function [CC]: FUNCTION: Forms part of the polypeptide exit tunnel. {ECO:0000256|HAMAP-Rule:MF_01328}.; FUNCTION: One of the primary rRNA binding proteins, this protein initially binds near the 5'-end of the 23S rRNA. It is important during the early stages of 50S assembly. It makes multiple contacts with different domains of the 23S rRNA in the assembled 50S subunit and ribosome. {ECO:0000256|HAMAP-Rule:MF_01328}.
Pathway:
Active site:
Binding site:
Calcium binding:
DNA binding:
Metal binding:
Nucleotide binding:
Site:
Gene names (primary): rplD
Gene names (synonym):
Mass: 23,004
Subunit structure [CC]: SUBUNIT: Part of the 50S ribosomal subunit. {ECO:0000256|HAMAP-Rule:MF_01328}.
Gene ontology (GO): ribosome [GO:0005840]; rRNA binding [GO:0019843]; structural constituent of ribosome [GO:0003735]; translation [GO:0006412]
Gene ontology IDs: GO:0003735; GO:0005840; GO:0006412; GO:0019843
Chain:
Signal peptide:
Domain [CC]:
Sequence similarities: SIMILARITY: Belongs to the ribosomal protein L4P family. {ECO:0000256|HAMAP-Rule:MF_01328}.
Protein families: Ribosomal protein L4P family
Coiled coil:
Domain [FT]:
Motif:
Region:
EMBL: AGBZ02000004
ProteinModelPortal:
MEROPS:
EnsemblBacteria KO: KAI92083
UniPathway:
CDD:
Gene3D:
HAMAP: 3.40.1370.10
InterPro: MF_01328_B
PANTHER: IPR002136;IPR023574;IPR013005
PIRSF: PTHR10746
PRINTS:
PROSITE:
Pfam:
ProDom: PF00573
SMART:
SUPFAM:
TIGRFAMs: SSF52166

58176-58803(+)

>nucleotide sequence
ATGAAATTACAAGTACTTGATGCGAAGGGAACGAGCGTTAAAGAAATTAGTGTAAATGAT
GCCATTTGAGGAATTGAGCCACATCAGCAAGCAATGTTTGATGCTGTTATTGCGCAACAA
GCCGCAATGCGTCAAGGCACACACAAAACTAAGACAAGAACTGAAGTATCTGGTGGGGGA
AGAAAACCTTGAAGACAAAAAGGAACTGGTCGTGCTCGCCAAGGTTCAATTAGAGCACCA
CAATGAAAAGGAGGAGGGATTGTTTTTGGTCCAACTCCGGAGAAAAATTATTTAAAACAT
GTCAATAAGAAAGTTAGAAAATTAGCAATTAAATCTGCATTATCATTAAAAGTTCAAGAT
AAAAACATTATGATAATTGATCAATTTGGAATTGACAAACCTTCAACAAAAGCAATGGTT
GAAGTCTTAAATAATTTAAAAGTTAATGGTGAAAAACTATTAATTATTACCACAGAAGGT
GATGAAGTTAATTTTAAATCATCACGTAATATTGAAAAAGTAAATATAATTACATCAACT
GGTATTAATATTTATGATTTATTAAATGCAAACAAATTATTAGTAACAGAACAAGCATTA
AAAGCAATTGAGGAGGTGTACGCATAA

>protein sequence
MKLQVLDAKGTSVKEISVNDAIWGIEPHQQAMFDAVIAQQAAMRQGTHKTKTRTEVSGGG
RKPWRQKGTGRARQGSIRAPQWKGGGIVFGPTPEKNYLKHVNKKVRKLAIKSALSLKVQD
KNIMIIDQFGIDKPSTKAMVEVLNNLKVNGEKLLIITTEGDEVNFKSSRNIEKVNIITST
GINIYDLLNANKLLVTEQALKAIEEVYA