SPM_005510

Uniprot: A0A037UJN6
Description: ribonuclease
EC number: 3.1.-.-
Annotation score: 2 out of 5
Miscellaneous [CC]:
Protein existence: Inferred from homology
Catalytic activity:
Cofactor:
Enzyme regulation:
Function [CC]: FUNCTION: Endoribonuclease that initiates mRNA decay. {ECO:0000256|HAMAP-Rule:MF_00335, ECO:0000256|SAAS:SAAS00548734}.
Pathway:
Active site:
Binding site:
Calcium binding:
DNA binding:
Metal binding:
Nucleotide binding:
Site:
Gene names (primary): rny
Gene names (synonym):
Mass: 57,590
Subunit structure [CC]:
Gene ontology (GO): integral component of membrane [GO:0016021]; plasma membrane [GO:0005886]; endoribonuclease activity [GO:0004521]; RNA binding [GO:0003723]; mRNA catabolic process [GO:0006402]
Gene ontology IDs: GO:0003723; GO:0004521; GO:0005886; GO:0006402; GO:0016021
Chain:
Signal peptide:
Domain [CC]:
Sequence similarities: SIMILARITY: Belongs to the RNase Y family. {ECO:0000256|HAMAP-Rule:MF_00335, ECO:0000256|SAAS:SAAS00548740}.; SIMILARITY: Contains 1 HD domain. {ECO:0000256|HAMAP-Rule:MF_00335}.; SIMILARITY: Contains 1 KH domain. {ECO:0000256|HAMAP-Rule:MF_00335}.
Protein families: RNase Y family
Coiled coil:
Domain [FT]: DOMAIN 199 259 KH. {ECO:0000259|PROSITE:PS50084}.
Motif:
Region:
EMBL: AGBZ02000004
ProteinModelPortal:
MEROPS:
EnsemblBacteria KO: KAI92194
UniPathway:
CDD:
Gene3D:
HAMAP: 1.10.3210.10;3.30.1370.10
InterPro: MF_00335
PANTHER: IPR003607;IPR006674;IPR006675;IPR004087;IPR004088;IPR017705;IPR022711
PIRSF:
PRINTS:
PROSITE:
Pfam: PS50084
ProDom: PF12072;PF01966;PF00013
SMART:
SUPFAM: SM00471;SM00322
TIGRFAMs: SSF54791

168591-170121(+)

>nucleotide sequence
ATGCAAACACACATATGAGTAATTATCCTTATTGCTGTTGCAATAGGTTCTTACTTTCTT
GGATATTTATTTGAAAAATATTTAAGATTTAAATTAATCAAAAAAACAAAATTAAAAATT
AAACAAGCTGAAGAAAAAGCAAAAAAAATTATTAACGCTGCTAAAGCAGATGGACGCGTT
GAAGCAGCACAAATTAGACAAGAAATGAAAGATGAATTAACTCGCAAACGTGAAGAATTT
TTAGCGACCGAAAAATTTTTAGTAGATAGAGAACGTTTAATTGTTGAGAGAGAAGAAGTA
TTAAATGGCAAAGAGCAAGAAGTGTTTCGCAAGAAAGAAGAATTGCAAGGAAAGATTAAC
TATTATCAAGAAATGGTAGAACGGAATCTTCATCAACTTGAAAAAGTTGCCGGATATTCA
CTTGAAGAAGCAAAGGATGTTCTTTTTAAAGAAATAAGTGATCGGTATCAAAAGGAAATT
GGTGAATTTTTACGAAATGCTGAAAATACTGCAAAAATTAATGCCAAACAAACAGCCATT
AACATTATTACTACTGCAATTGAACGTTATGCAGCAAAAGTTGTGGCAGAAAAAACAACA
ACTTCAATTTATTTAGAAGACGATAATATGAAAGGACGAATTATTGGGAAAGATGGTCGT
AATATTCGTACATTTGAAATAGCTGCAGGGGTTGATTTAATTATTGATGATACACCTAAT
GTTGTCCAAATTTCATCTTTTAATCCAATTCGTCGGGAAATTGCAAAAAAAACTTTAGAA
AAATTATTACTTGATGGTCGAATTCAACCAAATCGGATTGAAGAAACAATCAAATTAGAA
CAAGAAGAAATTGAAATGACAATTCTTGAAGCAGGAAAAGAAATTGCAACTGAATTAGCA
ATTGATAATTTAGATATTGAATTAATTCGTCACTTAGGAATTTTAAAATATCGAACTAGT
TATGGTCAAAATGTCTTGTTACATTCTGTAGAAGTAGCAAAATTAGCAGCAATTATGGCT
AGTGAACTGGGGTTAGATCCATCAATTGCAATGAGAGCTGGGCTATTACATGATATTGGA
AAAGCAGTTGATTTTGAAAATGAAGGAAGTCATGTTACCTTAGGTATCCAAATTGCAACA
AAATGTAATGAACATCCAATTATTATTAATGCAATTGCTTCGCACCATGGTGAAGTACCA
GTAACTAATCCTTATTCTGTTTTAGTATCAGCTGCTGATACTTTATCAGCTGCTCGCCCA
GGTAGCCGTAATAATACTGTTGAAAATTATATTGCTCGAATGAATGAGCTAGAAAAAATT
TGTCAAACAGTACATGGTGTCCAATCAGCTTATGTTTTACAAGCAGGACGACAAATTCGA
GTTATTGTTAATCCAATTATTAATGACGATGCTCGTACTCATAAAATTGCTCTTGATATT
AAGGAAAAAATTAAACAAGCAAAAACAATTCCTGGTGATATTGTTATTACCGTTATCCGT
GAATTACGAGTCACTGAAACTGTTATTTAA

>protein sequence
MQTHIWVIILIAVAIGSYFLGYLFEKYLRFKLIKKTKLKIKQAEEKAKKIINAAKADGRV
EAAQIRQEMKDELTRKREEFLATEKFLVDRERLIVEREEVLNGKEQEVFRKKEELQGKIN
YYQEMVERNLHQLEKVAGYSLEEAKDVLFKEISDRYQKEIGEFLRNAENTAKINAKQTAI
NIITTAIERYAAKVVAEKTTTSIYLEDDNMKGRIIGKDGRNIRTFEIAAGVDLIIDDTPN
VVQISSFNPIRREIAKKTLEKLLLDGRIQPNRIEETIKLEQEEIEMTILEAGKEIATELA
IDNLDIELIRHLGILKYRTSYGQNVLLHSVEVAKLAAIMASELGLDPSIAMRAGLLHDIG
KAVDFENEGSHVTLGIQIATKCNEHPIIINAIASHHGEVPVTNPYSVLVSAADTLSAARP
GSRNNTVENYIARMNELEKICQTVHGVQSAYVLQAGRQIRVIVNPIINDDARTHKIALDI
KEKIKQAKTIPGDIVITVIRELRVTETVI