SPM_005650

Uniprot: A0A037UR88
Description: RNA polymerase sigma factor RpoD
EC number:
Annotation score: 1 out of 5
Miscellaneous [CC]:
Protein existence: Inferred from homology
Catalytic activity:
Cofactor:
Enzyme regulation:
Function [CC]:
Pathway:
Active site:
Binding site:
Calcium binding:
DNA binding:
Metal binding:
Nucleotide binding:
Site:
Gene names (primary):
Gene names (synonym):
Mass: 51,995
Subunit structure [CC]:
Gene ontology (GO): DNA binding [GO:0003677]; sigma factor activity [GO:0016987]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; DNA-templated transcription, initiation [GO:0006352]
Gene ontology IDs: GO:0003677; GO:0003700; GO:0006352; GO:0016987
Chain:
Signal peptide:
Domain [CC]:
Sequence similarities: SIMILARITY: Belongs to the sigma-70 factor family. {ECO:0000256|SAAS:SAAS00611284}.
Protein families: Sigma-70 factor family
Coiled coil:
Domain [FT]: DOMAIN 175 188 RNA_pol_sigma70. {ECO:0000259|PROSITE:PS00715}.
Motif:
Region:
EMBL: AGBZ02000004
ProteinModelPortal:
MEROPS:
EnsemblBacteria KO: KAI92215
UniPathway:
CDD:
Gene3D:
HAMAP: 1.10.10.10
InterPro:
PANTHER: IPR014284;IPR000943;IPR007627;IPR007624;IPR007630;IPR013325;IPR013324;IPR011991
PIRSF:
PRINTS:
PROSITE: PR00046
Pfam: PS00715
ProDom: PF04542;PF04539;PF04545
SMART:
SUPFAM:
TIGRFAMs: SSF88659;SSF88946

194330-195668(+)

>nucleotide sequence
ATGGGATTATCAAAAAAAGAAGTCAGAGATATGAAATCTTTTGATGAATTTAAAGAATAT
ATTAATAAATATTTAGAAGAAAATAACAATGAAATTGAACAAGAAAAATTAATAACATTA
ATTAATGATCATTTTGAAGTTGATGATAATGATGTTAAAGAATATTTTGAAGAATTAGTC
ACTAATGGTGTTGAATTTAGTGATGTTAATTTAGAAGAATTAGAAGAAAATGAAGTTCCT
GAACCAGAAAAAGTAACAAAAAAACAACCAGATGAAAAATTACGTTATAAAGTTGGTGGT
ATTTCAAATGAAACAAAAATTCAGGATATTATTAAAGCTTACTTTAATATTTTGGGAACA
AGTAAGATTTTAACTCGTGAGGAAGAAATTAAATATGCCAAAATTCTAGAATCATCTGAT
CCAGAAGAAAGACGTTTTGGAAGGGATAAATTAATCACTTCTAACTTAAAGTTAGTTGTT
TCAGTTGCCCGCAAACATTTAAACCGGGGATTAGATTTTTCAGATTTAATTGAAGAAGGA
AACATCGGGTTAATGAAAGCTGTTGATAAGTTTGATTATAAGCGTGGTTTTAAATTTTCA
ACATATGCAACATGATGAATTAGACAAGCAACAACACGGGCAATTGCTGATCAAGCGCGA
ACAATTCGGATCCCTGTTCATATGGTTGAAACAATTAATAAATTAACAAGAATTGAACGT
CAATTAACACAAGAATTAGGGCGCGAACCAAGTTACAATGAAATTGCCGAAAAAATGGGG
CAAGGAATGGTTGGCGAAAAAGTTCGTGAAATTAAAAGATTATCAATTGAACCGGTTTCA
TTAGAAAAACCAATTGGTGATGAGGATGATACTCATTTTGGTGATTTTGTTGATGATAAA
GATATTTTTACACCGGATGAATATGCTGAAAAAGAATCATTACGAGAAGTAATTGATGAA
GTTTTCCATGAAATTTTATCAGCCCGAGAAGAAAAAGTAATTAGAATGCGGTTTGGACTT
TTACCAACAAAGTTACGAACAGTATTACGGTTAGCAAAAGAATGCGAAGATGAAACTTTT
CCTGAATTAGTCCAAACAGTTAAAGCGCTTGATATTCACTATGATACACCAATTGAAAAA
GTACAAAGTCAAAAAAATGCGTTAATTGATAAACATTTATCAAAATATGATTCGCCAAAA
ACATTAGAAGAAGTAGGCAAAGAGTTTAAAGTTACACGTGAACGAATTCGTCAAATTGAA
GCAAAAACAATTCGTAAGTTTAAACCAAACCAAGCTAACTCAAAAGCAAAAGTATTAAAA
GACTTTTTTAAAGGATAG

>protein sequence
MGLSKKEVRDMKSFDEFKEYINKYLEENNNEIEQEKLITLINDHFEVDDNDVKEYFEELV
TNGVEFSDVNLEELEENEVPEPEKVTKKQPDEKLRYKVGGISNETKIQDIIKAYFNILGT
SKILTREEEIKYAKILESSDPEERRFGRDKLITSNLKLVVSVARKHLNRGLDFSDLIEEG
NIGLMKAVDKFDYKRGFKFSTYATWWIRQATTRAIADQARTIRIPVHMVETINKLTRIER
QLTQELGREPSYNEIAEKMGQGMVGEKVREIKRLSIEPVSLEKPIGDEDDTHFGDFVDDK
DIFTPDEYAEKESLREVIDEVFHEILSAREEKVIRMRFGLLPTKLRTVLRLAKECEDETF
PELVQTVKALDIHYDTPIEKVQSQKNALIDKHLSKYDSPKTLEEVGKEFKVTRERIRQIE
AKTIRKFKPNQANSKAKVLKDFFKG